Journal Papers

  1. Xianfeng Yang, Alvina Goh, Anqi Qiu , “Locally Linear Diffeomorphic Metric Embedding (LLDME) for Surface-Based Anatomical Shape”, NeuroImage, accepted, 2011.

  2. Jia Du, Laurent Younes, Anqi Qiu , “Whole Brain Diffeomorphic Metric Mapping via Integration of Sulcal and Gyral Curves, Cortical Surfaces, and Images”, NeuroImage, accepted, 2011.

  3. Jee Hoon Roh, Anqi Qiu , Sang Won Seo, Hock Wei Soon, Jong Hun Kim, Geon Ha Kim, Min-Jung Kim, Duk L. Na, “Volume Reduction in Subcortical Regions according to Severity of Alzheimers Disease”, Journal of Neurology, accepted, 2011.

  4. Anqi Qiu, Ta Anh Tuan, Puay San Woon, Muhammad Farid Abdul-Rahman, Steven Graham, Kang Sim, “Hippocampal-cortical structural connectivity disruptions in schizophrenia: An integrated perspective from hippocampal shape, cortical thickness, and integrity of white matter bundles”, NeuroImage, 52(4):1181-1189, 2010.

  5. Jidan Zhong, Desiree Yee Ling Phua, Anqi Qiu,Quantitative Evaluation of LDDMM, FreeSurfer, and CARET for Cortical Surface Mapping”, NeuroImage, 52(1):131-141, 2010.

  6. Anqi Qiu, Marcy Adler, Crocetti, Michael I. Miller, and Stewart H. Mostofsky, “Basal Ganglia Shapes Predict Social and Motor Dysfunctions in Boys with Autism Spectrum Disorder”, JAACAP, 49(6):539-551, 2010. (FEATURE AIRTICLE)

  7. Anqi Qiu, Kenichi Oishi, Michael I. Miller, Constantine G. Lyketsos, Susumu Mori, and Marilyn Albert, “Surface-Based Analysis on Shape and Fractional Anisotropy of White Matter Tracts in Alzheimer’s disease”, PLoS One, 5(3):e9811, 2010.

  8. Anqi Qiu, Timothy Brown, Bruce Fischl, Jun Ma, Michael I. Miller, “Atlas Generation of Subcortical and Ventricular Structures with its Applications in Shape Analysis”, IEEE transactions on Image Processing, 19(6):1539-1547, 2010.

  9. Jidan Zhong, Anqi Qiu, "Multi-Manifold Diffeomorphic Metric Mapping for Aligning Cortical Hemispheric Surfaces", NeuroImage, NeuroImage, 49(1):355-65, 2010.

  10. Anqi Qiu , Lei Wang, Laurent Younes, Michael Harms, J. Tilak Ratnanather, Michael I. Miller, John G. Csernansky, "Neuroanatomical asymmetry patterns in individuals with schizophrenia and their non-psychotic siblings", NeuroImage 47:1221-1229, 2009.(COVER PAGE).

  11. Anqi Qiu , Jidan Zhong, Steven Graham, Ming Ying Chia, Kang Sim, " Combined analyses of thalamic volume, shape, and white matter integrity in first-episode schizophrenia ", NeuroImage, 47:1163-1171, 2009.

  12. Weiming Zeng,Anqi Qiu, BettyAnn Chodkowski, and James J. Pekar, "Spatial and temporal reproducibility-based ranking of the independent components of BOLD fMRI data", NeuroImage, 46:1041-54, 2009.

  13. Anqi Qiu, Christine Fennema Notestine, Anders M. Dale, Michael I. Miller, and the Alzheimer’s Disease Neuroimaging Initiative, "Regional Subcortical Shape Abnormalities in Mild Cognitive Impairment and Alzheimer's Disease ", NeuroImage,45:656-661, 2009.

  14. Anqi Qiu, Warren D. Taylor, Zheen Zhao, James R. MacFall, Michael I. Miller, David C. Steffens, K. Ranga R. Krishnan, "APOE Related Hippocampal Shape Alteration in Geriatric Depression", NeuroImage, 44:620-626, 2009.

  15. Anqi Qiu, Marilyn Albert, Laurent Younes, Michael I. Miller, "Time Sequence Diffeomorphic Metric Mapping and Parallel Transport Track Time-Dependent Shape Changes", NeuroImage, 45:S51-S60, 2009.

  16. Anqi Qiu, Deana Crocetti, Marcy Adler, Mark Mahone, Martha Deckla, Michael I. Miller, and Stewart H. Mostofsy, "Basal ganglia volume and shape in children with ADHD", Am J Psychiatry,166:74-82, 2009. (FEATURE ARTICLE) .

  17. Michael I. Miller, Anqi Qiu, "The Emerging Discipline of Computational Functional Anatomy", NeuroImage, 45:S16-S39, 2009.

  18. Michael I. Miller, Carey Priebe, Anqi Qiu, Bruce Fischl, Anthony Kolasny, Youngser Park, Evelina Busa, Jorge Jovicich, Peng Yu, Brad Dickerson, Randy L. Buckner, and the Morphometry BIRN, "Collaborative Computational Anatomy: An MRI Morphometry Study of the Human Brain via Diffeomorphic Metric Mapping", Human Brain Mapping, 30:2132-41, 2009.

  19. Anqi Qiu, Michael I. Miller, "Multi-Structure Network Shape Analysis via Normal Surface Momentum Maps", NeuroImage, 42(4):1430-8,2008. [BibTex] [PDF]

  20. Joan Glaunès, Anqi Qiu, Michael I. Miller, Laurent Younes, "Large Deformation Diffeomorphic Curve Matching", International Journal of Computer Vision, 80(3):317-336, 2008 (equal contribution with the first author, correspondence author).

  21. Anqi Qiu, Marc Vaillant, Patrick Barta, J. Tilak Ratnanather, Michael I. Miller, "Region of Interest Based Analysis of Cortical Thickness Variation of Left Planum Temporale in Schizophrenia and Psychotic Bipolar Disorder", Human Brain Mapping, 29:973–985, 2008. (COVER PAGE) [BibTex] , [PDF]

  22. Hao Huang, Can Ceritoglu, Xin Li, Anqi Qiu, Michael I. Miller, Peter C.M. van Zijl, Susumu Mori, "Correction of B0 susceptibility induced distortion in diffusion-weighted images Using Large-Deformation Diffeomorphic Metric Mapping", Magnetic Resonance Imaging, 26(9): 1294-1302, 2008. [BibTex] [PDF]

  23. Anqi Qiu, Laurent Younes, Michael I. Miller, "Intrinsic and Extrinsic Analysis in Computational Anatomy", NeuroImage, 39(4):1803-1814, 2008. (COVER PAGE) [BibTex] , [PDF]

  24. Laurent Younes, Anqi Qiu, Raimond L. Winslow, Michael I. Miller, "Transport of Relational Structures in Groups of Diffeomorphisms", Journal of Mathematical Imaging and Vision, J Math Imaging Vis 32: 41–56, 2008. [BibTex] , [PDF]

  25. Anqi Qiu, Laurent Younes, Michael I. Miller, John G. Csernansky, "Parallel Transport in Diffeomorphisms Distinguishes Time-Dependent Hippocampal Surface Atrophy in Healthy Aging and Alzheimer's Disease", NeuroImage, 40(1):68-76, 2008. [BibTex] , [PDF]

  26. Anqi Qiu, Laurent Younes, Lei Wang, J. Tilak Ratnanather, Sarah K. Gillepsie, Gillian Kaplan, John Csernansky, Michael I. Miller, "Combining Anatomical Manifold Information via Diffeomorphic Metric Mappings for Studying Cortical Thinning of the Cingulate Gyrus in Schizophrenia", Neuroimage, 37, 821-833, 2007. (COVER PAGE) [BibTex] , [PDF]

  27. Lei Wang, Malini Hosakere, Joshua C. L. Trein, J. Tilak Ratnanather, Deanna M. Barch, Paul A. Thompson, Anqi Qiu, Mokhtar Gado, Michael I. Miller, John G. Csernansky," Abnormalities of Cingulate Gyrus Neuroanatomy in Schizophrenia", Schizophr Res 93, 66-78, 2007. [BibTex] , [PDF]

  28. Marc Vaillant, Anqi Qiu, Joan Glauns, Michael I. Miller, "Diffeomorphic Metric Surface Mapping in Subregion of the Superior Temporal Gyrus", NeuroImage 34, 1149-1159, 2007. (correspondence author). [BibTex] , [PDF]

  29. Anqi Qiu, Dmitri Bitouk, Michael I. Miller, "Smooth Functional and Structural Maps on the Neocortex via Orthonormal Bases of the Laplace-Beltrami Operator", IEEE Trans. Med. Imaging, 25, 1296-1306, 2006. [BibTex] , [PDF]

  30. Anqi Qiu, Benjamin J. Rosenau, Adam S. Greenberg, Patrick Barta, Steven Yantis, Michael I. Miller, "Estimating Linear Cortical Magnification in Human Primary Visual Cortex via Dynamic Programming", NeuroImage, 31(1), 125-138, 2006. [BibTex] , [PDF]

  31. Patrick Barta, Michael I. Miller and Anqi Qiu," A Stochastic Model for Studying the Laminar Structure of Cortex from MRI", IEEE Trans. Med. Imaging, 24 (6), 728-743, 2005. [BibTex] , [PDF]

  32. Anqi Qiu, Christoph E. Schreiner and Monty A. Escabi, "Gabor Analysis of Auditory Midbrain Receptive Fields: Spectro-Temporal and Binaural Composition". J Neurophysiol, 90, 456-476, 2003. [BibTex] , [PDF]

  33. Anqi Qiu and Jing Bai, "Multiple Modeling in the Study of Interaction of Hemodynamics and Gas Exchange", Computers in Biology and Medicine, 31, 59-72, 2001 [BibTex] , [PDF]

  34. Anqi Qiu and Jing Bai, "A Mathematical Model of Human Respiratory System", Beijing Biomedical Engineering, No. 3, 2000. [BibTex] , [PDF]

Conference Proceedings

  1. Moo K. Chung, Anqi Qiu , Brendon, M. Nacewicz, Seth Pollak, Richard J. Davidson, "Tiling Manifolds with Orthonormal Basis", MICCAI2008, workshop on MFCA, Sep. 2008, New York (oral presentation).

  2. Anqi Qiu, Michael I. Miller, "Cortical Hemisphere Registration via Diffeomorphic Curve Mapping", MICCAI, 10:186-193, Oct 2007, Australia. [BibTex] , [PDF]

  3. Anqi Qiu, Benjamin J. Rosenau, Adam S. Greenberg, Patrick Barta, Steven Yantis, Michael I. Miller, "Localizing Retinotopic fMRI Activation in Human Primary Visual Cortex via Dynamic Programming", Proceedings of the 27nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Sep 2005, Shanghai. [BibTex] , [PDF]

  4. Anqi Qiu, Jing Bai, "Interaction of hemodynamics and gas exchange: a computer simulation", Proceedings of the 22nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 3:1923 1926, Jul 2000, Chicago. [BibTex] , [PDF]

Abstracts

  1. Yu-Chin Chiu, Adam S. Greenberg, Anqi Qiu, Michael I. Miller, Steven Yantis, "Anatomical connectivity underlying the topographical organization of visual spatial attention: A Combined fMRI and DTI Study", Neuroscience conference, Oct 2009, USA.

  2. Anqi Qiu , Deana Crocetti, Michael I. Miller, Stewart H. Mostofsky, "Shape Analysis on Subcortical Structures with its Application in Children with Autism", ISMRM, April 2009, USA.

  3. Way Cherng Chen, Xavier Golay, Kai-Hsiang Chuang, Anqi Qiu, "Automatic liver segmentation from 3D abdominal MR images of rodents", ISMRM, April 2009, USA.

  4. Jidan Zhong, Anqi Qiu, "  Diffeomorphic Mapping of Cortical Hemispherical Surface via Integrating Sulcal Curves and Triangulated Meshes", Human Brain Mapping, Jun 2009, USA.

  5. Anqi Qiu, Michael I. Miller , Anders M. Dale , Christine Fennema-Notestine ,and the Alzheimer’s Disease Neuroimaging Initiative, "Regional Shape Abnormalities in Mild Cognitive Impairment and Alzheimer’s Disease", Human Brain Mapping, Jun 2009, USA.

  6. Anqi Qiu, Marilyn Albert, Constantine Lyketsos, Laurent Younes,Michael I. Miller, "Diffeomorphic Mapping of Longitudinal Anatomical Shapes", Human Brain Mapping, Jun 2009, USA.

  7. Anqi Qiu, Deana Crocetti, Marcy Adler, Michael I.Miller, Steward H.Mostofsky, "Basal Ganglia Shape Predicts Social and Motor Dysfunctions in Boys with Autism", Human Brain Mapping, Jun 2009, USA.

  8. Jidan Zhong, Randy L. Buckner, Bruce Fischl, Michael I. Miller, Anqi Qiu, "Differences in Corpus Callosum Area and Shape in Advanced Aging and Alzheimer's Diesease", Human Brain Mapping, Jun 2008, Australia.

  9. Anqi Qiu, Michael I. Miller, "Subcortical Network Shape Analysis via Segmentation Denoising and Random Surface Momentum Maps, Human Brain Mapping", Jun 2008, Australia.

  10. Anqi Qiu, Timothy Brown, Bruce Fischl, Anthony Kolasny, Jun Ma, Randy L. Buckner, Michael I. Miller, "Subcortical Structure Template Generation with its Applications in Shape Analysis", Human Brain Mapping, Jun 2008, Australia.

  11. Anqi Qiu, Michael I. Miller, "Computational Functional Anatomy", Asilomar Conference on Signals, Systems, and Computers, Nov 2007, Montery, CA.

  12. Anqi Qiu, Laurent Younes, Michael I. Miller, "Intrinsic and Extrinsic Analysis in Computational Anatomy", Human Brain Mapping, Jun 2007, Chicago.

  13. Anqi Qiu, Laurent Younes, Lei Wang, J. Tilak Ratnanather, John Csernansky, Michael I. Miller, "Cortical Thinning of Cingulate Gyrus in Schizophrenia", International Congress on Schizophrenia Research, Apr 2007, Colorado Springs.

  14. Marc Vaillant, Anqi Qiu, Michael I. Miller, "Curve and Surface Matching via Currents", SIAM, Jul 2006, Boston.

  15. Anqi Qiu, Dmitri Bitouk, Michael I. Miller, "Smooth Anatomical and Functional Maps via Harmonics of Cortical Surface", Human Brain Mapping, Jun 2006, Florence.

  16. Anqi Qiu, Marc Vaillant, Patrick Barta, Michael I. Miller, J. Tilak Ratnanather, "Left Planum Temporale Cortical Thickness Variation in Schizophrenia", Human Brain Mapping, Jun 2006, Florence.

  17. Marc Vaillant, Anqi Qiu, Joan Glaunes, J. Tilak Ratnanather, Michael I. Miller, "Validation of Cortical Surface Matching via Currents", Human Brain Mapping, Jun 2006, Florence .

  18. Anqi Qiu, Patrick Barta,, Michael I. Miller, J. Tilak Ratnanather, "Asymmetry in Laminar Structure of Planum Temporale", the 29th Annual Midwinter Meeting, Association for Research in Otolaryngology, Feb 2006, Baltimore.

  19. Anqi Qiu, Dmitri Bitouk, J Tilak Ratnanather, Clare Poynton, Lei Wang, Dana Boatman, Patrick Barta, John Csernansky, Michael I. Miller, "Visualizing cortical thickness on the gray/white cortical surface", Human Brain Mapping, Jun 2005, Toronto.

  20. Anqi Qiu, Benjamin J. Rosenau, Adam Greenberg, Steven Yantis, Patrick Barta, Michael I. Miller "Linear Cortical Magnification within Human Primary Visual Cortex via Dynamic Programming", Human Brain Mapping, Jun 2005, Toronto.

  21. Benjamin J. Rosenau, Adam S. Greenberg, Janet S. Sunness, Anqi Qiu, Patrick Barta, Michael I. Miller, Steven Yantis, "Retinal Lesion Projection Zones Identified in Visual Cortex Using fMRI", Human Brain Mapping, Jun 2005, Toronto.

  22. Anqi Qiu, Dmitri Bitouk, Lei Wang, J Tilak Ratnanather, John G. Csernansky, Michael I. Miller, "Cingulate Cortical Thickness Variability on the Gray/White surface", International Congress on Schizophrenia Research, Apr 2005, Savannah, GA.

  23. Anqi Qiu, Patrick Barta, Michael I. Miller, "A parametric statistical model for measuring cortical thickness." Human Brain Mapping, Jun 2004, Budapest.

  24. Monty A. Escabi, Anqi Qiu, Heather L. Read, Christoph E. Schreiner, "Quantification of Spectrotemporal and Binaural Receptive Field Characteristics in the Cat Inferior Colliculus", the 32th Annual Meeting, Society of Neuroscience, Nov 2002, Orlando..

  25. Anqi Qiu, Monty A. Escabi, "Modeling spectrotemporal integration in the central nucleus of the inferior colliculus", the 25th Annual Midwinter Meeting, Association for Research in Otolaryngology, Jan 2002. St. Petersburg Beach.

  26. Anqi Qiu and Jing Bai, "A mathematical model of metabolic rate of oxygen in the human", Academic periodical abstracts of China, 2000, Beijing.